Aroon ChandeATC/ bioinformatics engineer

32 papers · 2014–2026

Publications

Peer-reviewed work in population and clinical genomics, pathogen genomics, and computational methods. ★ marks a selected paper.

2026Personalized feedback about immunity corrects risk misestimation and motivates vaccinationPNAS Nexus · Sinclair, A.H., Taylor, M.K., Beckett, S.J., Chande, A.T., Weitz, J.S., Samanez-Larkin, G.R.Full text
2023localcovid19now: processing and mapping COVID-19 case data at subnational scalesJournal of Open Source Software · Beckett, S.J., Brandel-Tanis, F.A., Nguyen, Q., Chande, A.T., Rishishwar, L., Andris, C., +1Full text
2023Communicating COVID-19 exposure risk with an interactive website counteracts risk misestimationPLOS ONE · Sinclair, A.H., Taylor, M.K., Brandel-Tanis, F., Davidson, A., Chande, A.T., Rishishwar, L., +5Full text
2023Multiplex Real-time PCR Assay for the Detection of all Chlamydia Species and Simultaneous Differentiation of C. psittaci and C. pneumoniae in Human Clinical SpecimensAnnals of Laboratory Medicine · Wolff, B.J., Gaines, A., Conley, A.B., Norris, E., Rishishwar, L., Chande, A.T., +3Full text
2023Genomic analysis of Chlamydia psittaci from a multistate zoonotic outbreak in two chicken processing plantsJournal of Genomics · Wolff, B.J., Waller, J.L., Benitez, A.J., Gaines, A., Conley, A.B., Rishishwar, L., +5Full text
2022Mutations in SORL1 and MTHFDL1 possibly contribute to the development of Alzheimer’s disease in a multigenerational Colombian FamilyPLOS ONE · Tejada Moreno, J.A., Villegas Lanau, A., Madrigal Zapata, L., Baena Pineda, A.Y., Velez Hernandez, J., Campo Nieto, O., +7Full text
2021Genetic ancestry and ethnic identity in EcuadorHuman Genetics and Genomics Advances · Nagar, S.D., Conley, A.B., Chande, A.T., Rishishwar, L., Sharma, S., Mariño-Ramírez, L., +3Full text
2021Genome-Enabled Molecular Subtyping and Serotyping for Shiga Toxin-Producing Escherichia coliFrontiers in Sustainable Food Systems · Im, S.B., Gupta, S., Jain, M., Chande, A.T., Carleton, H.A., Jordan, I.K., +1Full text
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2021The Impact of Ethnicity and Genetic Ancestry on Disease Prevalence and Risk in ColombiaFrontiers in Genetics · Chande, A.T., Nagar, S.D., Rishishwar, L., Mariño-Ramírez, L., Medina-Rivas, M.A., Valderrama-Aguirre, A., +2Full text
2021Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fieldsScientific Reports · Medina-Cordoba, L.K., Chande, A.T., Rishishwar, L., Mayer, L.W., Valderrama-Aguirre, L.C., Valderrama-Aguirre, A., +3Full text
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2020Real-time, interactive website for US-county-level COVID-19 event risk assessmentNature Human Behaviour · Chande, A.T., Lee, S., Harris, M., Nguyen, Q., Beckett, S.J., Hilley, T., +2PDFFull textCode
2020Online COVID-19 Dashboard Calculates How Risky Reopenings and Gatherings Can BeScientific American · Weitz, J.S., Harris, M., Chande, A.T., Rishishwar, L., Jordan, I.K.Full text
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2020Ancestry effects on type 2 diabetes genetic risk inference in Hispanic/Latino populations.BMC Medical Genetics · Chande, A.T., Rishishwar, L., Conley, A.B., Valderrama-Aguirre, A., Medina-Rivas, M.A., Jordan, I.K.PDF
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2020The phenotypic consequences of genetic divergence between admixed Latin American populations: Antioquia and Chocó, ColombiaGenome Biology and Evolution · Chande, A.T., Rishishwar, L., Ban, D., Nagar, S.D., Conley, A.B., Rowell, J., +3PDFFull text
2020Admixture-enabled selection for rapid adaptive evolution in the AmericasGenome Biology · Norris, E.T., Rishishwar, L., Chande, A.T., Conley, A.B., Ye, K., Valderrama-Aguirre, A., +1Full text
2019Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clustersGenome Biology · Crisan, C.V., Chande, A.T., Williams, K., Raghuram, V., Rishishwar, L., Steinbach, G., +4PDFFull textCode
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2019STing: accurate and ultrafast genomic profiling with exact sequence matchesNucleic Acids Research · Espitia, H., Chande, A.T., Nagar, S.D., Smith H., Jordan, I.K., Rishishwar, L.PDFFull textCode
2019Differences Among Luminal and Mucosal Microbiota Among Fecal Microbiota Transplant RecipientsMicrobiology Resource Announcements · Bernardy, E.E., Petit, R.A., Moller, A.G., Blumenthal, J.A., McAdam, A.J., Priebe, G.P., +5PDFFull text
2019Differences Among Luminal and Mucosal Microbiota Among Fecal Microbiota Transplant RecipientsGastroenterology · Haydek, J.P., Rishishwar, L., Chande, A.T., Jordan, I.K., Tom, J., Neish, E., +5PDF
2018Bioconda: sustainable and comprehensive software distribution for the life sciencesNature Methods · Dale, R., Gruning, B., Sjodin, A., Rowe, J., Chapman, B. A., Tomkins-Tinch, C. H., +2Full text
2018GlobAl Distribution of GEnetic Traits (GADGET) web server: polygenic trait scores worldwideNucleic Acids Research · Chande, A.T., Wang, L., Rishishwar, L., Conley, A.B., Norris, E.T., Valderrama-Aguirre, A., +1PDFFull text
2018Characterization of a nontypeable Haemophilus influenzae ThermonucleasePLOS ONE · Cho, C., Chande, A.T., Gakhar, L., Hunt, J., Ketterer, M. R., Apicella, M. A.Full text
2018Genome sequences of 15 Klebsiella spp. isolates from sugarcane fields in Colombia’s Cauca ValleyGenome Announcements · Medina-Cordoba, L.K., Chande, A.T, Rishishwar, L., Mayer, L.W., Mariño-Ramírez, L., Valderrama-Aguirre, L., +3PDFFull text
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2017Influence of genetic ancestry and socioeconomic status on type 2 diabetes in the diverse Colombian populations of Chocó and AntioquiaScientific Reports · Chande, A.T., Rowell, J., Rishishwar, L., Conley, A.B., Norris, E.T., Valderrama-Aguirre, A., +2PDFFull text
2017Characterization of Inner and Outer Membrane Proteins from Francisella tularensis Strains LVS and Schu S4 and Identification of Potential Subunit Vaccine CandidatesmBio · Post, D. M. B., Slütter, B., Schilling, B., Chande, A. T., Rasmussen, J. A., Jones, B. D., +5PDFFull text
2017Assortative mating on ancestry-variant traits in admixed Latin American populationsFrontiers in Genetics · Norris, E.T., Rishishwar, L., Wang, L., Conley, A.B., Chande, A.T., Dabrowski, A.M., +2PDFFull text
2017Identification and characterization of AckA-dependent protein acetylation in Neisseria gonorrhoeaePLOS ONE · Post, D.M.B., Schilling, B., Reinders, L. M., DaSouza, A. K., Ketterer, M. R., Kiel, S. J., +3PDFFull text
2017Method of sequence typing with in silico aptamers from a Next Generation Sequencing platformEspitia, H, Chande, A. T., Jordan, I. K., Rishishwar, L.
2017RampDB: a web application and database for the exploration and prediction of receptor activity modifying protein interactionsDatabase · Topaz, N., Mojib, N., Chande, A. T., Kubanek, J., Jordan, I. K.PDFFull text
2016Whole-Genome Sequences of 26 Vibrio cholerae IsolatesGenome Announcements · Watve, S. S., Chande, A. T., Rishishwar, L., Mariño-RamÃŋrez, L., Jordan, I. K., Hammer, B. K.PDFFull text
2016Absence of mgrB Alleviates Negative Growth Effects of Colistin Resistance in Enterobacter cloacaeAntibiotics · Wozniak, J.E., Chande, A.T., Burd, E.M., Band, V.I., Satola, S.W., Farley, M.M., +3Full text
2014Role of the nuclease of nontypeable Haemophilus influenzae in dispersal of organisms from biofilmsInfection and Immunity · Cho, C., Chande, A., Gakhar, L., Bakaletz, L. O., Jurcisek, J. A., Ketterer, M, +6PDFFull text